Biopankin julkaisuluettelo

Tulossa

Estimating the use of biological samples in Finnish biobanksand hospital collections
Aaro Tupasela, Tom Southerington, Johanna Mäkelä, Lila Kallio, Merja Perälä, Veli-Matti Kosma, Arto Mannermaa ,Tiina Jokela, Kimmo Pitkänen, Mika Kontro, Tiina Vesterinen, Eero Punkka, Theresa Knopp, Minna Ruddock, Raisa Serpi, Anne-Mari Moilanen, Leena Viiri, Sanna Siltanen, Enni Makkonen and Päivi Ingalsuo.

Constrained hypermutation and absence of TERT promoter mutations in Lynch syndrome-associated urothelial cancer
Jussi Nikkola, Lauri Ryyppö, Juuso Vuorinen, Lauri Moilanen, Maarit Ahtiainen, Kirsi Pylvänäinen, Hanna Selin, Tuomo Virtanen, Matti Nykter, Thea Veitonmäki, Jukka-Pekka Mecklin, Toni T. Seppälä, Matti Annala

High incidence and geographic distribution of cleft palate in Finland are associated with the IRF6 gene
Fedik Rahimov, Pekka Nieminen, Priyanka Kumari, Emma Juuri, Tiit Nikopensius, Kitt Paraiso, Jakob German, Antti Karvanen, Mart Kals, Abdelrahman G Elnahas, Juha Karjalainen, Mitja Kurki, Aarno Palotie, FinnGen; Estonian Biobank Research Team, Arja Heliövaara, Tõnu Esko, Sakari Jukarainen, Priit Palta, Andrea Ganna, Anjali P Patni, Daniel Mar, Karol Bomsztyk, Julie Mathieu, Hannele Ruohola-Baker, Axel Visel, Walid D Fakhouri, Brian C Schutte, Robert A Cornell, David P Rice

TWINGEN: protocol for an observational clinical biobank recall and biomarker cohort study to identify Finnish individuals with high risk of Alzheimer's disease
Eero Vuoksimaa, Toni T Saari, Aino Aaltonen, Sari Aaltonen, Sanna-Kaisa Herukka, Paula Iso-Markku, Tarja Kokkola, Aija Kyttälä, Sari Kärkkäinen, Hilkka Liedes, Miina Ollikainen, Teemu Palviainen, Ilona Ruotsalainen, Auli Toivola, Mia Urjansson, Tommi Vasankari, Henri Vähä-Ypyä, Markus M Forsberg, Mikko Hiltunen, Anu Jalanko, Reetta Kälviäinen, Teijo Kuopio, Jaakko Lähteenmäki, Pia Nyberg, Minna Männikkö, Raisa Serpi, Sanna Siltanen, Aarno Palotie, Jaakko Kaprio, Heiko Runz, Valtteri Julkunen; FinnGen BMJ Open. 2024 Jun 12;14(6):e081947

Plasma Proteomics Elucidated a Protein Signature in COVID-19 Patients with Comorbidities and Early-Diagnosis Biomarkers
Urbiola-Salvador V, Lima de Souza S, Macur K, Czaplewska P, Chen Z. Biomedicines. 2024; 12(4):840

Dysregulated germinal center reaction with expanded T follicular helper cells in autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy lymph nodes
Hetemäki I, Sarkkinen J, Heikkilä N, Drechsel K, Mäyränpää MI, Färkkilä A, Laakso S, Mäkitie O, Arstila TP, Kekäläinen E. J Allergy Clin Immunol. 2024 May;153(5):1445-1455. doi: 10.1016/j.jaci.2023.12.004. Epub 2023 Dec 19. PMID: 38128835.

Immunohistochemical Glucagon-like Peptide-1 Receptor Expression in Human Insulinomas
Vesterinen, T.; Peltola, E.; Leijon, H.; Hannula, P.; Huhtala, H.; Mäkinen, M.J.; Nieminen, L.; Pirinen, E.; Rönty, M.; Söderström, M.; et al. Int. J. Mol. Sci. 2023, 24, 15164.

TWINGEN – protocol for an observational clinical biobank recall and biomarker study to identify individuals with high risk of Alzheimer’s disease
Vuoksimaa, Saari et al. 2023

Programmed death-ligand 1 and tumor-infiltrating lymphocytes (TILs) – low TIL density may predict poorer long-term prognosis in T1 laryngeal cancer
Pakkanen, P., Ilmarinen, T., Halme, E. et al. Virchows Arch (2023).

Plasma Proteomics Unveil Novel Immune Signatures and Biomarkers upon SARS-CoV-2 Infection
Víctor Urbiola-Salvador, Suiane Lima de Souza, Peter Grešner, Talha Qureshi and Zhi Chen. Int. J. Mol. Sci. 2023, 24(7), 6276

FinnGen provides genetic insights from a well-phenotyped isolated population
Kurki MI et al., Nature. 2023 Jan;613(7944):508-518. doi: 10.1038/s41586-022-05473-8. Epub 2023 Jan 18. PMID: 36653562

The validity of rheumatoid arthritis diagnoses in Finnish biobanks
J Paltta, H-K Heikkilä, L Pirilä, KK Eklund, J Huhtakangas, P Isomäki, O Kaipiainen-Seppänen, K Kristiansson, AS Havulinna, T Sokka-Isler, A Palomäki & for the FinnGen investigators (2023). Scandinavian Journal of Rheumatology, 52:1, 1-9, DOI: 10.1080/03009742.2021.1967047

Immunohistochemical somatostatin receptor expression in insulinomas
Peltola, E., Vesterinen, T., Leijon, H., Hannula, P., Huhtala, H., Mäkinen, M., Nieminen, L., Pirinen, E., Rönty, M., Söderström, M., Arola, J. and Jaatinen, P. (2023), Immunohistochemical somatostatin receptor expression in insulinomas. APMIS, 131: 152-160.

An assessment of prevalence of Type 1 CFI rare variants in European AMD, and why lack of broader genetic data hinders development of new treatments and healthcare access
Jones AV et al., PLoS One 2022 Sep 6, 17(9):e0272260. doi: 10.1371/journal.pone.0272260

Recontacting biobank participants to collect lifestyle, behavioural and cognitive information via online questionnaires: lessons from a pilot study within FinnGen
Rodosthenis S Rodosthenous et al. BMJ Open 2022;12:e064695. doi:10.1136/bmjopen-2022-064695

Merkel cell polyomavirus is a passenger virus in both poroma and porocarcinoma
Meriläinen AS et al., J Cutan Pathol. 2022 Jan;49(1):49-54. doi: 10.1111/cup.14109. Epub 2021 Aug 11. PMID: 34313332

Performance of Finnish biobanks in nationwide pulmonary carcinoid tumour research
Vesterinen, T., Salmenkivi, K., Mustonen, H. et al. Virchows Arch 476, 273–283 (2020). doi: https://doi.org/10.1007/s00428-019-02625-6